Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLIVANWKMNGT---RSLFVNFIGKLNDKSNEITSKLVICPPFTSLPGNIEL-----NSNISIGAQNCHYKKSGSYTGEISAEMLKELGCTYVILGHSERT---HETNGEIKLKSETAIESGLHPIICVGENLEDRESSKTKEVVEYQCKSRLPIHGE-----YTVAYEPIWAIGTGHV----PSNNAIAEVIEVIQSYTSKK-----HVIYGGSVSLENIENLSNILNLSGVLIGSASLDFDRFHKIVQQVEKAY
3UWZ Chain:B ((13-258))
---IIAGNWKMNKTVQEAKDFVNALPTLPD-SKEVES--VICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAI---KSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK---
General information:
TITO was launched using:
RESULT:
Template:
3UWZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127049 for 1758 contacts (-72.3/contact) +
2D Compatibility (PS) -23923 + (NN) -10238 + (LL) 740
1D Compatibility (HY) -14800 + (ID) 4600
Total energy: -179870.0 ( -102.32 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_3UWZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWZ-query.scw
PDB file :
Tito_Scwrl_3UWZ.pdb
: