Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------MLEALKRVG-TDFVLKTKDLFTPSESQVYVKDLRKVMIYKDGRKCRYPKNYDQVVESGKVIENKDMHGNSVLDKDRNPTYRLLYGNKNKDGWPIFELTKIMEIGDKSYFTIKFLVDKGKVSKGKCDNNDYHSFYKPFGFLKIDLEKYLPVF--EAQKTKKSTCSFEFTNSSV---------PTKKTKNKKSNEVKEIVDE-----KERNGELLYT----SDYKKLSTSFFEIRDQSNNLELGKSIISVPIVFAAGLAKICAKLLTYIPMELGEYLIGKQSLIAKFFGYFFLFTPAVAVKNSVNMLATLLKLPICAFVANKEEYGDAYWTMWKYQLKECWQEAKNDYSVIKDGKRSELKKKDYPKREVAGTWKELDAKRSIIEEELEGRLSKGDENMTDSGKQEKDLEQDTTQPRTLIQRKIDYVSKLNEERDQDKCVSQIHN |
| 4MND Chain:A ((40-457)) | LMKAVILAAGLGGGVPKPLVRVGGCEIILRTMKLLSPH--------VSEFIIVAS----RYADDIDAFLKDKGFNYKIVRHDR----PEKGNGYSLLVAKNHVED------RFILTMGDHVY-SQQFIE--------KAVRGEGVIADREPRFVDIGEATKIRVEDGRVAKIGKDLREFDCVDTGFFVLDDSIFEHAEKLRDREEIPLSEIVKLARLPVTYVDGELWMDVDTKEDVRRANRALVSAAVGDGFISRKINRKISTRISAAIVNKVNPNQMTLISFLVGAFSALASFFSIPLAGLLYQFSSILDGCDGEIARASLKMSKKGGYVDSILDRFVDFLFLAIIALL--YPKTATVAMFAIFGSVMVSYTSEKYKAEFGESIRVLNYIPGKRDERIFLIMIFCLLSAIS---------------LQWIFWMFLFVAAISLTRVVVTLLAVLVS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4MND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 52919 for 2925 contacts (18.1/contact) +
2D Compatibility (PS) -38685 + (NN) 2562 + (LL) 2316
1D Compatibility (HY) -16000 + (ID) 2800
Total energy: 312.0 ( 0.11 by residue)
QMean score : ?
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