Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDRPLSPHLQIYKVQVTNFFSIMHRLTGILLFLLLVM-------LSWYFTLHVYFPELFIVKCLN---VLLSTFIAKLVCILCFISFSYHFLNGIRHLLWDAGFNLEITDVLKSAMLLTVMLILSTMAFLFVFI
4YTN Chain:G ((52-169))
-LKRPIAPHLTIYKPQMTWMVSGLHRVTGCAMAGTLLIGGVGFSVLPLDFTTFVEF-----IRGLGIPWVILDTF----KFIIAF-PIAFHTLNGIRFIGFDMAKGTDIPSIYRGAYLVLGLAALISLAVVVYPR
General information:
TITO was launched using:
RESULT:
Template:
4YTN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69134 for 577 contacts (-119.8/contact) +
2D Compatibility (PS) -11100 + (NN) -7615 + (LL) 1476
1D Compatibility (HY) -10400 + (ID) 2000
Total energy: -98773.0 ( -171.18 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_4YTN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YTN-query.scw
PDB file :
Tito_Scwrl_4YTN.pdb
: