Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVGAVQIKKTGGPE-VLEFIDKSIGEPKGEEVLIRHTAIGLNRYDLEHRKGVRKI-KGLPSVLGVEAVGVIEKLGKKIDDSLQIGDRVGYCTAPPGAYCEKRVIHQKYLVKIPDEIPDEVVAAVLFKGMTAHYLINQSYKIKPGAFVLVHGANGGLGQIICQWAKDKKGVVIGSVSSDKKMEVALQNGCTYAINYNDKNFVSKIMEITQNRGVGAVYDPIGYSTSRLSFESLSKFGIYVSYGQISGIAPVSFSLLSSRSLFATG-TSIYHYK--RDRFALVLTAMEIFEMVKKKLLTVR-INKKYKFDEIIKAHHDMENR-KVSGLNIIKVF |
| 3GMS Chain:A ((2-330)) | HGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAFV-SRELIGKRVLPLR-GEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLSGIQ-VNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMKVHSTYELADVKAAVDVVQSAEKTKGKVFLTSY |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GMS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -194910 for 2726 contacts (-71.5/contact) +
2D Compatibility (PS) -35142 + (NN) -18941 + (LL) -72
1D Compatibility (HY) -17200 + (ID) 3700
Total energy: -269965.0 ( -99.03 by residue)
QMean score : 0.484
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