Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLNLFNNNQVDYSRQNYIILDENKHIYNAVINDLSWKYLFLFGPKGSGKTHLAHIWQSINNAIFINVNNFI------------SEIRYSNAFILEDVQDIQ-----DEATLLHCYNYMKENNKRLLITSSTSPKRLNFKLKDLSSRILSTISAKIPSASEELLRIMLIKRFSDKQLKVDLKVINYILARIERSFC-SINRIIEKIDNGS-M-----------GSNVTIPFVSTLLKRDTT
3VFD Chain:A ((150-365))
--------------------------------------GLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLGEKLVRALFAVARELQPSIIFIDQVDSLLDASRRLKTEFLIEFDGVQ---RVLVMGATNRPQ---ELDEAVLRRFI--KRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPENMSASEMRNIRLSDFTESLKKIKR
General information:
TITO was launched using:
RESULT:
Template:
3VFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91043 for 1190 contacts (-76.5/contact) +
2D Compatibility (PS) -17277 + (NN) -11112 + (LL) 2796
1D Compatibility (HY) -3600 + (ID) 1400
Total energy: -121636.0 ( -102.22 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_3VFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VFD-query.scw
PDB file :
Tito_Scwrl_3VFD.pdb
: