Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSLVLVYTTFSNVKEAKAVSEELLNKKLIICVNIFPKVNSLYLWKGEINSSCEVIAIMKSRSDQVDKIVEKVEAMHSYDQPAIVIIPIEKVNKSFANWVNSVIDVSSIGV
3GSD Chain:A ((18-122))
YSNAIVVLCTAPDEASAQNLAAQVLGEKLAACVTLLPGATSLYYWEGKLEQEYEVQLLFKSNTDHQQALLTYIKQHHPYQTPELLVLPVRDGDKDYLSWLNASLL------
General information:
TITO was launched using:
RESULT:
Template:
3GSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68536 for 733 contacts (-93.5/contact) +
2D Compatibility (PS) -11739 + (NN) -5455 + (LL) 360
1D Compatibility (HY) -9600 + (ID) 1300
Total energy: -96270.0 ( -131.34 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_3GSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GSD-query.scw
PDB file :
Tito_Scwrl_3GSD.pdb
: