Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MNNKDIYSDDFQNALVDIILNIDKINVKEV--FDDSCRAVDQDNKKDTLNRSPKDFS-------INISDIVRY---------SILCMENLSSDKIE-ENINMIKNHS------------------SELNDNDMFIQE-KNNFTTNFNKF-----CNALGINIANFKSGKSY-------VFKPKSLFVLYDILSNNSVYL------HFFKNGINDKD---IDSSNRIKENLYYFINHEITDQRDYEHALTNYYLYFLVDSNIEIGIKSI-IIKIFTEKGITS---------KDKLQILEYYLDEIDDLNTEISTKIADAHVKNSTNFLENEKV-------SINSNLAKYITHRDTRASAPKNMLLS-LILNSDLVSPKDLEEKELKYPKKITKEHHDKLIKEINKALDYYNDNNTTPSDYFYITSD |
| 3J9O Chain:B ((79-505)) | VIDKLIDLQVNSIISNDEFRALEQEWLKVQEVCQEDYDNVEVSILDVKKEELQYDFERNLYDISSSDFFKKVYVSEFDQYGGEPYGAILGLYNFENTTNDIIWLTGMGMVAKNSHAPFIASIDKSFFGVKDLSEITHIKSFEALLEHPRYKEWNDFRNLDVAAYIGLTVGDFMLRQPYNPENNPVQYKLMEGFNEFVDYDKNESYLWGPASIHLVKNMMRSYDKTRWFQYIRGVESGGYVKNLVACVYDNKGILETKSPLNVLFADYMELSLANIGLIPFVSEKGTSNACFFSVNSAKKVEEFVDGFDSANSRLIANLSYTMCISRISHYIKCVIRDKIGSIVDVESIQKILSDWISEFVTTVYQPTPLEMARYPFRNVSIEVKTIPGKPGWYSCKINVIPHIQF-----EGMNTTMTIDTRLEPELFGTNN |
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General information:
TITO was launched using:
| RESULT:
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Template: 3J9O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 15393 for 2004 contacts (7.7/contact) +
2D Compatibility (PS) -34275 + (NN) 6187 + (LL) 496
1D Compatibility (HY) -17600 + (ID) 3350
Total energy: -33149.0 ( -16.54 by residue)
QMean score : 0.078
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