Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVPTVVIDLVDQL-KGNYSIKLILEVLNIPKSTYYRWKNKTYKNDTVTQKVIELCEANHYTYGYRKITALINQCYTSPINHKRVQRMMQKHHLNCRVRPKKTTRIGKPYYKTDNLLQR
2COB Chain:A ((17-55))
---EILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKERL----------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2COB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27873 for 243 contacts (-114.7/contact) +
2D Compatibility (PS) -4055 + (NN) -1496 + (LL) 5604
1D Compatibility (HY) -1600 + (ID) 300
Total energy: -29720.0 ( -122.30 by residue)
QMean score : 0.693
(partial model without unconserved sides chains):
PDB file :
Tito_2COB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2COB-query.scw
PDB file :
Tito_Scwrl_2COB.pdb
: