Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MKRVSYSVETKYKAVEMKAAG--FSTKEIMKELNIKNRTQVETWWRWYRNGESYRFSQHVGKQYTYGKGLEELSEVEQLKLENKRKDIELDILKKYKALERKWYQQ------------------------
1HLV Chain:A ((1-131))
MGPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNI-PPSTLSTILKNKRAILASERKYGVASTCRKTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRRS
General information:
TITO was launched using:
RESULT:
Template:
1HLV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 29798 for 596 contacts (50.0/contact) +
2D Compatibility (PS) -11241 + (NN) -3001 + (LL) 64
1D Compatibility (HY) -2000 + (ID) 800
Total energy: 12820.0 ( 21.51 by residue)
QMean score : 0.281
(partial model without unconserved sides chains):
PDB file :
Tito_1HLV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HLV-query.scw
PDB file :
Tito_Scwrl_1HLV.pdb
: