Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKVIKMLVVTLAFLLVLAGCSGNSNKQSSDNKDKETTSIKHAMG--TTEIKGKPKRVVTLYQGATDVAVSLGVK--PVGAVESWTQKPKFEYIKNDL--KDTKIVGQEPAPNLEEISKLKPDLIVASKVRNEKVYDQLSKIAPTVSTDT---VF-K-FKDTTKLMGKALGKEKEAEDLLKKYDDKVAAFQKDAKAKYKDAWPLKASVVNFRADHTRIYA-GGYAGEILNDLGFKRNKDLQKQVDNGKDIIQLTSKESIPLMNADHIFVVKSDPNAKDAALVKKTESEWTSSKEWKNLDAVKNNQVSDDLDEITWN--LAGGYKSSLKLIDDLYEKLNIEKQSK |
| 3GFV Chain:A ((14-299)) | ----------------------------------KEQITVKHQLDKNGTKVPKNPKKVVVFDFGSLDTLDKLGLDDIVAGLPKQVL-PK---YLS-KFKDDKYADVGSLKEPDFDKVAELDPDLIIISAR-QSESYKEFSKIAPTIYLGVDTAKYMESFKSDAETIGKIFDKEDKVKDELANIDHSIADVKKTAEKLN-KN--GLV--IMANDGKISAFGPKSRYGLIHDVFGVAPADQNIKA----STHGQSVSYEYISKTNPDYLFVIDRGTAIG----ETSSTKQVVENDYVKNVNAVKNGHVI-YLDSATWYLSGGGLE-SMTQMIKEVKDGLEKEN--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GFV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -22289 for 2293 contacts (-9.7/contact) +
2D Compatibility (PS) -29113 + (NN) -10484 + (LL) 3324
1D Compatibility (HY) -8800 + (ID) 3550
Total energy: -70912.0 ( -30.93 by residue)
QMean score : 0.448
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