Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGG------VIDDIKAQWGTLDEFKNEFANKATTLFGSGWTWLVVNDGKLEIVTTPNQDNPLTE------GKTPILLFDVWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQAAK
1Y67 Chain:C ((3-212))
-AYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADKKGALRNNAGGHANHSMFWQIMG--------NQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVKDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWNVVNWDEVSKRYAAAK
General information:
TITO was launched using:
RESULT:
Template:
1Y67.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91547 for 1521 contacts (-60.2/contact) +
2D Compatibility (PS) -19574 + (NN) -3342 + (LL) -112
1D Compatibility (HY) -20400 + (ID) 5550
Total energy: -140525.0 ( -92.39 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_1Y67.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y67-query.scw
PDB file :
Tito_Scwrl_1Y67.pdb
: