Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQTQPKFLTIYNTLYKEIQIGKYPSGHALPTEKELCARFDVSRMTLRQAIKLLAEDGIVESTRGKGHFVIPQTNAQHASSMDQFKHPLDQILLAR-VSMSSINYRVDLESEYTNHLFANHP-SAVIAMERYYQKKDNHSKQADAFCFTFIPLNVIDTFKVNTQNE-DDMKTFVEQTIYSNAYQSDLKMSITKAPRFKNHSHVFDGDTHCWLIIETLYAQTPYPIMINKWYIPQEISELTLTRIRQSDY
3BWG Chain:A ((8-236))
--------QQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFVRKHKRKG-YISLL-SNQG------DFNVTSKVIELDVRKPTPEAAENLNIGMDEDIYYVKRVRYINGQ----TLCYEESYYTKSIVTYLN--NEIVSHSIFHYIREGLGLKIGFSDLFLHVGQLNEEEAEYLGLEAGLPKLYIESIFHLTNGQPFDYSKISYNYEQSQFVVQANS----
General information:
TITO was launched using:
RESULT:
Template:
3BWG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110245 for 1557 contacts (-70.8/contact) +
2D Compatibility (PS) -23845 + (NN) -9583 + (LL) 1968
1D Compatibility (HY) -8800 + (ID) 1600
Total energy: -152105.0 ( -97.69 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_3BWG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BWG-query.scw
PDB file :
Tito_Scwrl_3BWG.pdb
: