Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFTYSYLFRMISHEMKQKADQKLEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSLQ
4LD5 Chain:H ((1-139))
MEFTYSYLFRMISHEMKPKADQKLEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSLQ
General information:
TITO was launched using:
RESULT:
Template:
4LD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39785 for 841 contacts (-47.3/contact) +
2D Compatibility (PS) -14649 + (NN) -5123 + (LL) 0
1D Compatibility (HY) -18000 + (ID) 6900
Total energy: -84457.0 ( -100.42 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_4LD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LD5-query.scw
PDB file :
Tito_Scwrl_4LD5.pdb
: