Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKGMFLSSFYATRKQTYIYFIVAIIAAGYFAVFNPLMSSAMAGVMLITPITDNIKHEKDSRWMYYVSTLPVKRSDYIKSYFAFYLILFGASLMIGLVVTTIVTQSVMIGIMSGLMSFGIIGAYSIIFPLTFKFGAENSNVIMIVASILLLFSFVVFFFIYGMVS------GA-SALEFEKISTEGWLVV-IVYAVI-GIVITSVSYILSIKIFNKQEL
4CUA Chain:A ((4-181))
-QGANISDQWTGSELP-------------LAFASDSNPSDPVSNVNDKLISYN--NQPANRWTNW------NRSNPEAS----VGVLFGDSG----ILSKRSVDNLSVGFHED-HGVGAPKSYVIEYYVGKTVPTAPKNPSFVGNEDHVFNDSANWKPVTNLKAPAQLKAGEMNHFSFDKVETYAIRIRMVKADNKRGTSITEVQ------IFAK---
General information:
TITO was launched using:
RESULT:
Template:
4CUA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -200580 for 1358 contacts (-147.7/contact) +
2D Compatibility (PS) -18192 + (NN) 1174 + (LL) 4800
1D Compatibility (HY) 2400 + (ID) 1550
Total energy: -211948.0 ( -156.07 by residue)
QMean score : 0.110
(partial model without unconserved sides chains):
PDB file :
Tito_4CUA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CUA-query.scw
PDB file :
Tito_Scwrl_4CUA.pdb
: