Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEA-KEYWLCWVTTERNEQGPYY---AGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKLSSDALHQAFN
4TYZ Chain:A ((1-109))
----------------------------------------------------------NIEGVFRKSFPDLAGETLLDSFNCAWVEGSALKQGYLFITPHWLCFQSTLAAAHFSIEYDEIKDIIKSKSVKMFENAIEVKTHLNDTIFLTNFL-QRDQAYSALMSQWLK----
General information:
TITO was launched using:
RESULT:
Template:
4TYZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20920 for 698 contacts (-30.0/contact) +
2D Compatibility (PS) -10682 + (NN) 4057 + (LL) 3324
1D Compatibility (HY) -3600 + (ID) 850
Total energy: -28671.0 ( -41.08 by residue)
QMean score : 0.174
(partial model without unconserved sides chains):
PDB file :
Tito_4TYZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TYZ-query.scw
PDB file :
Tito_Scwrl_4TYZ.pdb
: