Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVKNLFLGFVAVILTVCLIGLLILATNEDALAKVHKTINTLNAINVSTEDTYKKKMDILNIHTAKASEVNENVEKQNHFKHRVNANKSNSFNEQECQVIADRYADKHINDNYGLERISKTNHGYNYVYSNDNSTSKQHVSISNQGIITK
2FDY Chain:B ((271-327))
MTTLNLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAKM---------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2FDY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12040 for 250 contacts (-48.2/contact) +
2D Compatibility (PS) -5727 + (NN) -2825 + (LL) 4796
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -18296.0 ( -73.18 by residue)
QMean score : 0.690
(partial model without unconserved sides chains):
PDB file :
Tito_2FDY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FDY-query.scw
PDB file :
Tito_Scwrl_2FDY.pdb
: