Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAQDRKKVLVLGAGYAGLQTVTKLQKAISTEEAEITLINKNEYHYEAT-WLHEASAGTLNY-E-DVLYPVESVLKKDKVNF-VQAEVTKIDRDAKKVETN---QG---IYDFDILVVALGFVSETFGIEGMK-DHAFQIENVITARELSRHIEDKFANYAASKEKDDNDLSILVGGAGFTGVEFLGELTDRIPELCSKYGVDQNKVKITCVEAAPKMLPMFSEELVNHAVSYLEDRGVEFKIATPIVACNEK-----------------------GFVVEVDGEKQQLNAGTSVWAAGVRGSKLM-EESFEG-VKRGRIVTKQDLTINGYDNIFVIGDCSAFIPAGEER-PLPTTAQIAMQQGESVAKNIKRILNGESTEEFEYVDRGTVCSLGSHDGVGMVFGKPIAGKKAAFMKKVIDTRAVFKIGGIGLAFKKGKF |
| 3NTD Chain:A ((1-338)) | ----MKKILIIGGVAGGASAAARARRLS--ETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQM------------NNVEHATVVGGGFIGLEMMESLHHL-------------GIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSN--G-ELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQT-SDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGR------------------------------------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3NTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -171011 for 2467 contacts (-69.3/contact) +
2D Compatibility (PS) -32137 + (NN) -5278 + (LL) 4976
1D Compatibility (HY) -6800 + (ID) 3550
Total energy: -213800.0 ( -86.66 by residue)
QMean score : 0.517
|
|
|