Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEHTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNSKKEGTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK
1VLH Chain:B ((15-169))
-----AVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENPRKKCMFTLEERKKLIEEVLSDLDGVKVDVHHGLLVDYLKKHGIKVLVRGLRAVTDYEYELQMALANKKLYSDLETVFLIASEKFSFISSSLVKEVALYGGDVTEWVPPEVARALNEKLK
General information:
TITO was launched using:
RESULT:
Template:
1VLH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106110 for 1202 contacts (-88.3/contact) +
2D Compatibility (PS) -16650 + (NN) -5670 + (LL) 612
1D Compatibility (HY) -18800 + (ID) 4150
Total energy: -150768.0 ( -125.43 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_1VLH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VLH-query.scw
PDB file :
Tito_Scwrl_1VLH.pdb
: