Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSNKSLAMIVVAIIIVGVLAFQFMNHTGPFKKGTNHETVQDLNGKDKVHVQRVVDGDTFIANQNGKEIKVRLIGVDTPETVKPNTPVQPFGKEASNYSKKTLTN-QDVYLEYDK-EKQDRYGRTLAYVWISKDRMYNKELVEKGLAREKY-FSPNGKYRNVFIEAQNKAKQQKLNIWSK
4K5W Chain:A ((9-141))
---------------------------------------------KEPATLIKAIDGDTMKFMYKGQPMTFRLLLVDTPETKHP---VEKYGPEASAFFKKMVENAKKIEVEFDKGQRTDKYGRGLAYIY-ADGKMVNEALVRQGLAKVAYVYKPNNTHEQHLRKSEAQAKKEKLNIWS-
General information:
TITO was launched using:
RESULT:
Template:
4K5W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1099 for 996 contacts (-1.1/contact) +
2D Compatibility (PS) -13778 + (NN) -5961 + (LL) 3420
1D Compatibility (HY) -9200 + (ID) 2550
Total energy: -29168.0 ( -29.29 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_4K5W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K5W-query.scw
PDB file :
Tito_Scwrl_4K5W.pdb
: