Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVVVQRVKEA--SVTNDTLN------NQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNKLNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAY--GLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ
3LMV Chain:C ((1-159))
MRVVIQRVKGAILSVR-----KELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD----
General information:
TITO was launched using:
RESULT:
Template:
3LMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56456 for 1022 contacts (-55.2/contact) +
2D Compatibility (PS) -15809 + (NN) -8014 + (LL) 208
1D Compatibility (HY) -14800 + (ID) 3050
Total energy: -97921.0 ( -95.81 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_3LMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LMV-query.scw
PDB file :
Tito_Scwrl_3LMV.pdb
: