Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKE-RGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVEVDKFNWYHILRKIESYADIKVERRVNEDVAFITDNGNYILDCKLPKGIDPYKFHEYLIHLTGVFETGYFLDM-ADQVIVGTQEGVKILEK
3ENV Chain:B ((41-235))
------------------------VGVGTGSTVNHFIDALGTMSEEIKGAVSSSVASTEKL----EALGIKIFDCNEVASLDIYVDGADEINADREMIKGGGAALTREKIVAAIADKFICIVDGTKAVDVLG-TFPLPVEVIPMARSYVARQLVKLGGDPCYRE-----GVITDNGNVILDVYGMKITNPKQLEDQINAIPGVVTVGLFAHRGADVVITGTPEGAKIEE-
General information:
TITO was launched using:
RESULT:
Template:
3ENV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96392 for 1580 contacts (-61.0/contact) +
2D Compatibility (PS) -20535 + (NN) -2688 + (LL) 2984
1D Compatibility (HY) -14400 + (ID) 3850
Total energy: -134881.0 ( -85.37 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_3ENV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ENV-query.scw
PDB file :
Tito_Scwrl_3ENV.pdb
: