Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTILSVQHVSKTYGKKHTFQALKDINFDIQKGEFVAIMGPSGSGKTTLLNVLSSIDQISSGSVIANGQELNKLNQKALAKFRKESLGFIFQDYSILPTLTVKENIMLPLSVQKMSKATMEENYKAITTALGIYDLGNKYPSELSGGQQQRTAAARAFVHKPQIIFADEPTGALDSKSANDLLQRLEEMNKSFDTTIVMVTHDPV-AASFAERVIMLKDGQIHTQLYQEGRSKQAFYEDIVHLQSVLGGVSNDI
1VCI Chain:A ((10-227))
MVEVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK------DRNISMVFQ------HMTVYENIAFPL--KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VCI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102039 for 1614 contacts (-63.2/contact) +
2D Compatibility (PS) -22614 + (NN) -11454 + (LL) 3456
1D Compatibility (HY) -19600 + (ID) 3400
Total energy: -155651.0 ( -96.44 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_1VCI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VCI-query.scw
PDB file :
Tito_Scwrl_1VCI.pdb
: