Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEEEKAKALLKQFEDAFKK----ENI-ECESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYR-LFISHQNSLVEQSSIPVVIAK
3CIS Chain:A ((20-160))
LGIIVGIDDSPAAQVAVRWAARDAELR-KIPLTLVHAVSPEVATWLEVPLPP-GVLRWQQDHGRHLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSKDAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIH
General information:
TITO was launched using:
RESULT:
Template:
3CIS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108204 for 1020 contacts (-106.1/contact) +
2D Compatibility (PS) -15133 + (NN) -9517 + (LL) -108
1D Compatibility (HY) -6000 + (ID) 1300
Total energy: -140262.0 ( -137.51 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_3CIS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CIS-query.scw
PDB file :
Tito_Scwrl_3CIS.pdb
: