Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MEVKDRLNFNFVATTHSAMDLIASVLSDSKYYLESFYNQASQELGDKRSDKGEKLAELFDLLFEYIKDSKFERLKEPSAYDYSCKKLYPEQNTSQKMRRVVLRGYKHNDKMYHTIVDMGS
2KRC Chain:A ((2-100))
GIKQYSQEELKEMALVEIAHELFEEH--KKPVPFQELLNEIASLLGVKKEELGDRIAQFYTDLN---IDGRFLALSDQ---TWGLRSWYPYDQLDEETQLEHHHHHH--------------
General information:
TITO was launched using:
RESULT:
Template:
2KRC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11228 for 657 contacts (17.1/contact) +
2D Compatibility (PS) -10312 + (NN) -3461 + (LL) 1432
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -4663.0 ( -7.10 by residue)
QMean score : 0.324
(partial model without unconserved sides chains):
PDB file :
Tito_2KRC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KRC-query.scw
PDB file :
Tito_Scwrl_2KRC.pdb
: