Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKPKKNTLPCSLSVKMSYFMRLLIKWRTRSLSHKMMTLVQILSILALASKASEDLEEQLKKIKDYIYKTLNAKIASDVYDRVLILVNEYCANEELFDKESVKISDLLIQDIQLYALVDEMLKEDKYQVQHTILKGIIKRKYDEAYSLNSEDRILLEYQERLLEPSYASFSNKKFK
3J6V Chain:F ((1-124))
MP---------------RYELALILKAMQR---------PETAAALKRTLEALMDRGAVVRSLENLGERTLPYKMSA----------------HSQRHTRGGYFLVDFYAPTTTVASIMEHLSRDI-----DVIRPNVVKHPLTQEVKECEGIVPVPLEEKLYSTKKRK-------
General information:
TITO was launched using:
RESULT:
Template:
3J6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14461 for 852 contacts (-17.0/contact) +
2D Compatibility (PS) -13022 + (NN) -1545 + (LL) 3896
1D Compatibility (HY) -800 + (ID) 950
Total energy: -26882.0 ( -31.55 by residue)
QMean score : 0.134
(partial model without unconserved sides chains):
PDB file :
Tito_3J6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J6V-query.scw
PDB file :
Tito_Scwrl_3J6V.pdb
: