Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------MGFLKVLKHDALGQVGNIVIGNFLITLTVLAVCFSSQSAEETTMLTLSYTLFFILGAFLLVAISVGAIKNLNALFSK---RGVLSFSLPISLESLLLPKILLPMVFFIFSLFWFVASVRLGYYLFNAQSSVLFILHTALKTFALKPTKTIGVALFLGLVLMKFLFVLSVLNATRIKKA---RFLLGGLLFILVGVVLELAFNSLLPLMSSSLSINEGFYYFLQQQELQENKYYLLWGVDF------LKILLLYGVIRYLLTHKLELD
5CMN Chain:E ((3-260))
LCPGLLKGVYQSEHLFESDHQSGAWCKDPLQASDKIYYMPWTPYRTDTLTEYSSKDDFIAGRPTTTYKLPHRVDGTGFVVY------DGALFFNKERTRNIVKFDLRTRIKS---------GEAIIANANYHDTSP----YRWGGKSDIDLAVDEN-GLWVIYATEQNNGKIVISQLNPYTLRIEGTWDTAYDKRSASNAFMICGILYVVKSNKIDYIYNT----DQSKDSLVDVPF---------PNSYQYIAAVDYNPRDNLLYVWNNYHVVKYSLDF-----
General information:
TITO was launched using:
RESULT:
Template:
5CMN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -257775 for 1774 contacts (-145.3/contact) +
2D Compatibility (PS) -22437 + (NN) 13728 + (LL) 3636
1D Compatibility (HY) -3200 + (ID) 1900
Total energy: -267948.0 ( -151.04 by residue)
QMean score : -0.027
(partial model without unconserved sides chains):
PDB file :
Tito_5CMN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5CMN-query.scw
PDB file :
Tito_Scwrl_5CMN.pdb
: