Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSITIPIVIAFDNHYAIPAGVSLYSMLACAKSENPKSQNPQLQSDNKKLFYKIHCLVD-NLSLENQQKLKETLVPFSAFASVDFLDISTPNLY-TTSVEPSVIDKIH-EAFLQLNIYAKTRFSKMVMCRLFL-----ASLFPQYDKIIMFDADTLFLNDVSE-SFF-IPLDSYYFGA---AKDFSS-PKS-LKHFQTEREREPRQKFSLY-EHYLKEKDMQIICENHYNVGFLIVNLKLWRADKLEEHLLNLTHQKGQ--CVFCPEQDLLTLACYQKVLQLPYIYNAHPFMANQKRFIPNQQEIIMLHFYFVGKPWILPTALYSKEWHEILLKTPFYAEYSVKFLKQMTECLSLQDKQKTFEFLAPLLNPKTLLEYVFFRLSKIFKRLKERFLNS |
| 1S4N Chain:A ((29-273)) | ----ACYVTLVRNKELKGLLSSIKYVENKINK---------------KFPYPWVFLNDEPFTEEFKEAVTKAVS-----SEVKFGILPKEHWSYPEWINQTKAAEIRADAA--TKYIYGGSESYRHMCRYQSGFFWRHELLEEYDWYWRVEPDIKLYCDINYDVFKWMQENEKVYGFTVSIHEYEVTIPTLWQTSMDFIKKNPEYLDENNLMSFLSNDNGKTYNLCHFWSNFEIANLNLWRSPA-YREYFDTLDHQGGFFYERWGDAPVHSIAAALFLPKDKIHYFSDIGYHHPPYDNCPLDKEVYNSNNCECDQGNDFTFQGYSCGKEYYDAQGLVKPKNWKKFRE------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1S4N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -129473 for 1564 contacts (-82.8/contact) +
2D Compatibility (PS) -23403 + (NN) -2942 + (LL) 5352
1D Compatibility (HY) -4800 + (ID) 1700
Total energy: -156966.0 ( -100.36 by residue)
QMean score : 0.351
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