Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEGFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLEAHLA
1N1Q Chain:B ((12-148))
-----LLNRQVANWVVLYVKLHNFHWNVNGPNFFTLHEKFEELYTEASGHIDTLAERVLSIGGSPIATLAASLEEASIKEATGGE-SAAEMVSSVVNDFVDLVGELKVARDVADEADDEATADMLDAIEAGLEKHVWMLEAFLE
General information:
TITO was launched using:
RESULT:
Template:
1N1Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42255 for 1039 contacts (-40.7/contact) +
2D Compatibility (PS) -14949 + (NN) -9769 + (LL) 692
1D Compatibility (HY) -12000 + (ID) 2400
Total energy: -80681.0 ( -77.65 by residue)
QMean score : 0.670
(partial model without unconserved sides chains):
PDB file :
Tito_1N1Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N1Q-query.scw
PDB file :
Tito_Scwrl_1N1Q.pdb
: