Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MQEILIPLKEKSYKVFLGELPEIKLKQKALIISDSIVAGLHLPYLLERLNALEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYFRGIDFINIPTTLLAQVDASVGGKTGINTPYGKNLIGSFHQPKAVYMDLAFLKTLEKREFQAGVAEIIKMAVCFDKN----LVERLET----------------KDLKDCLEEVIFQSVNIKAQVVVQDEKERNIRAGLNYGHTFGMLIENETNYERFLHGEAIAIGMRMANDLALSLGMLTLKEYERIENLLKKFDLIFNYQITDIQKFYE-----------RLFLDKKSENQTLKFILPKGVGA-FEI-ASHIPKETILKVLEKWH |
1NVA Chain:B ((104-391)) | -----------------------------------------------------------------------------------GRDTVVIALGGGVIGDLTGFVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILKARILASARHKAYVVSAD---GGLRNLLNWGHSIGHAIEAILT-PQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALDK---GPKKKIVLLSAIGTPYETRASVVANEDIRVVLA--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1NVA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -153091 for 1996 contacts (-76.7/contact) +
2D Compatibility (PS) -26110 + (NN) -1516 + (LL) 8608
1D Compatibility (HY) -20400 + (ID) 5400
Total energy: -197909.0 ( -99.15 by residue)
QMean score : 0.472
|
|
|