Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLVDSFNRVIDYIRVSVTKQCNFRCQYCMPTTPLDFFDDEELLPLDNVLEFLKIAIDEGVKKIRITGGEPLLRKGLDEFIAKLHAYNKEVALVLSTNGFSLKKMAKGLKDAGLSRVNVSLDSLKSDRVLKISQKDALKNTLEGIEESLKVGLKLKLNTVVMKGVNDDEILELLEYAKNRSIQIRYIEFMENTHAKSLVKGLKEKEILDLIAQKYKIMGMEKPKQGSSKIYTLENGYQFGIIAPHSDDFCQSCNRIRLASDGKICPCLYYQDAIDAKEAIINKDTKMMKRLLKQSIINKPEKNMWNDKNGGTPTRAFYYTGG |
3IVS Chain:A ((57-194)) | -----------------------------------------FFDTEKKIQIAKALDNFGVDYIELTS--PVASEQSRQDCEAICKLG--LKCKILTHIRCHMDDARVAVETGVDGVDVVIGT-----------TYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVVSCDIECHFHNDTGMAIANAYCALEAGATHIDTSILGIGERNGITPLGALLARMYVTDREYITHKYKLNQLRELENLVADAVEVQIPFNNYITGMCAFTHKAGIHAKAILANP |
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General information:
TITO was launched using:
| RESULT:
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Template: 3IVS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -58073 for 882 contacts (-65.8/contact) +
2D Compatibility (PS) -13565 + (NN) -6146 + (LL) 3980
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -77404.0 ( -87.76 by residue)
QMean score : 0.635
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