Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFKEPYPARATFQVAKLPKDALVEIEAIAIK
3MQW Chain:C ((27-146))
---VVASPLAPEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSMDKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL
General information:
TITO was launched using:
RESULT:
Template:
3MQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47067 for 927 contacts (-50.8/contact) +
2D Compatibility (PS) -12704 + (NN) -2793 + (LL) 376
1D Compatibility (HY) -12800 + (ID) 3300
Total energy: -78288.0 ( -84.45 by residue)
QMean score : 0.311
(partial model without unconserved sides chains):
PDB file :
Tito_3MQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MQW-query.scw
PDB file :
Tito_Scwrl_3MQW.pdb
: