Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVIVLVVDSFKDTSNGTSMTAFRFFEALKKRGHAMRVVAPHVDNLGSEEEGYYNLKERYIPLVTEISHKQHILFAKPDEKILRKAFKGADMIHTYLPFLLEKTAVKIAREMRVPYIGSFHLQPEHISYNMKLGQFSWLNTMLFSWFKSSHYRYIHHIHCPSKFIVEELEKYNYGGKKYAISNGFDPMFKFEHPQKSLFDTTPFKIAMVGRY-SNEKNQSVLIKAVA-LSRYKQDIVLLLKGKGPDEKKIKLLAQKLGVKTEFGFVNSHELLEILKTCTLYA-HTANVESEAIACLEAISVGIVPVIANSPLSATRQFALDER-SLFEPNNAKDLSAKIDWWLENKLERERMQNEYAKSALNYTLENSVIQIEKVYEEAIKDFKNNPNLFKTLS |
| 2GEK Chain:A ((21-393)) | MRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPD-----------YVVSGGKAVFGPATHRKVKKWIAEG--DFDVLHIHEPNA-PSLSMLALQAAEGPIVATFHTSTTKSLTLSVFQGI-----------LRPYHEKIIGRIAVSDLARRWQMEAL-GSDAVEIPNGVDVASFADAPLLDGYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDEDELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAG-TAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSAQIMRVYETVSGAGIKVQVS----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GEK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -124721 for 3036 contacts (-41.1/contact) +
2D Compatibility (PS) -39208 + (NN) -19425 + (LL) 2892
1D Compatibility (HY) -2800 + (ID) 3300
Total energy: -186562.0 ( -61.45 by residue)
QMean score : 0.453
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