Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVFEKIIQGEIPCSKILENERFLSFYDINPKAKVHALVIPKQSIQDFNGITPE---LMAQMTSFIFEVVEKLGIKEKGYKLLTNVGKNAGQEVMHLHFHILSGDKH
1KPF Chain:A ((16-117))
-TIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLN-KGYRMVVNEGSDGGQSVYHVHLHVLGGRQM
General information:
TITO was launched using:
RESULT:
Template:
1KPF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83708 for 679 contacts (-123.3/contact) +
2D Compatibility (PS) -10806 + (NN) -6580 + (LL) 312
1D Compatibility (HY) -9600 + (ID) 1950
Total energy: -112332.0 ( -165.44 by residue)
QMean score : 0.679
(partial model without unconserved sides chains):
PDB file :
Tito_1KPF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KPF-query.scw
PDB file :
Tito_Scwrl_1KPF.pdb
: