Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTNGLFKMWGLFLVLIALVFNACSDSHKEKKDALEVIKQRGVLKVGVFSDKPPFGSVDSKGNYQGYDVVIAKRMALDLLGDENKIEFIPVEASARVEFLKANKVDIIMANFTRTKEREKVVDFANPYMKVALGVIS-KDGVIKNIEELKDKELIVNKGTTADFYFTKNYPNIKLLKFEQNTETFLALLNNKAIALAHDNTLLLAWVKQHPEFKLGITSLGDKDVIAPAIKKGNPKLLEWLNNEIDSLISSDFLKEAYQETLEPIYGDGIKPEEIIFE
2YJP Chain:A ((45-290))
-------------------------------AATVAAIKEKGVIRIGVFGDKPPFGYVDANGKNQGFDVEIAKDLAKDLLGSPDKVEFVLTEAANRVEYVRSGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNKPITDMAQLKDQTLLVNKGTTADAFFTKSHPEVKLLKFDQNTETFDALKDGRGVALAHDNALLWAWAKENPNFEVAIGNLGPAEFIAPAVQKGNADLLNWVNGEIAAMKKDGRLKAAYEKTLLPVYGEKVKPEALLAE
General information:
TITO was launched using:
RESULT:
Template:
2YJP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141165 for 2064 contacts (-68.4/contact) +
2D Compatibility (PS) -26701 + (NN) -13571 + (LL) 2600
1D Compatibility (HY) -24000 + (ID) 6650
Total energy: -209487.0 ( -101.50 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_2YJP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YJP-query.scw
PDB file :
Tito_Scwrl_2YJP.pdb
: