Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTFLIALALTASLIGAENTKWDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHTQDKADLQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYVLDNVHFHAPMEFLINNKTRPLSAHFVHKDAKGRLLVLAIGFEEGKENPNLDPILEGIQKKQNLKEVALDAFLPKSINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAETR
4YGF Chain:B ((8-234))
--------------------TKWDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHT----DLQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYVLDNVHFHAPMEFLINNKTRPLSAHFVHKDAKGRLLVLAIGFEEGKENPNLDPILEGIQKKQNFKEVALDAFLPKSINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAETR
General information:
TITO was launched using:
RESULT:
Template:
4YGF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93572 for 1774 contacts (-52.7/contact) +
2D Compatibility (PS) -23924 + (NN) -13180 + (LL) 2336
1D Compatibility (HY) -27600 + (ID) 11100
Total energy: -167040.0 ( -94.16 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_4YGF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YGF-query.scw
PDB file :
Tito_Scwrl_4YGF.pdb
: