Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDLSYSLERVLQEDPAARNKWEVLLLYPGIHALLCYRLAHALHKRRFYFIARALSQLARFITGIEIHPGAKIGRGLFIDHGMGVVIGETTEIGDDVTIYHGVTLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICVGDDVRIGANAVVLSDLPTGSTAVGAKAKTITKDR
4HZC Chain:F ((91-254))
---LRVDIQAVYDRDPAYSRFMDPVLYLKGFHAIQTHRLAHWLYKQGRKDFAYYLQSRSSSIFQTDIHPAARLGSGLFLDHATGLVVGETAVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVLKSVPHNVTVAGVPARIIGETG
General information:
TITO was launched using:
RESULT:
Template:
4HZC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136871 for 1335 contacts (-102.5/contact) +
2D Compatibility (PS) -17704 + (NN) -7095 + (LL) 308
1D Compatibility (HY) -12000 + (ID) 3550
Total energy: -176912.0 ( -132.52 by residue)
QMean score : 0.643
(partial model without unconserved sides chains):
PDB file :
Tito_4HZC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HZC-query.scw
PDB file :
Tito_Scwrl_4HZC.pdb
: