Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVSQYLYQNAQSIWGDCISHPFVQGIGRGTLERDKFRFYIIQDYLFLLEYAKVFALGVVKACDEAVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSIKEVAVAVLACGWSYLVIAQNLSQIPNALEDAFYGHWIKGYSSKEFQACVTWNINLLDSLALASSKQEIEKLKEIFIATSEYEYQFWDMAYQS
2GM8 Chain:A ((10-219))
-GVTGELRRRADGIWQRILAHPFVAELYAGTLPMEKFKYYLLQDYNYLVNFAKALSLAASRAPSVDLMKTALELAYGTVTGEMANYEALLKEVGLSLRDAAEAEPNRVNVSYMAYLKSTCALEGFYQCMAALLPCFWSYAEIAERHGGKLRENPVHVYKKWASVYLSPEYRGLVERLRAVLDSSGLS-----AEELWPYFKEASLYELEFWQAAYEG
General information:
TITO was launched using:
RESULT:
Template:
2GM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -164536 for 1731 contacts (-95.1/contact) +
2D Compatibility (PS) -21979 + (NN) -5002 + (LL) 440
1D Compatibility (HY) -12000 + (ID) 3050
Total energy: -206127.0 ( -119.08 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_2GM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GM8-query.scw
PDB file :
Tito_Scwrl_2GM8.pdb
: