Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRFGLNIDHIVTLREVRKTYEPEILEALFIAKNTHKVDLITIHLREDKRHIQNEDVLRLLEISPLPINIECSINAEITDFLCSLKNKPSKVTIVPENRNEVTTEGGLDCSLK--GLEEVIRAYHNKGIEVSLFVDPLKDALHFAKEHQVKQVEFHTGVYANLHNALYSNANNQIHAISTLKDKCPKELKEELHNAFLQLRRMSKEAFF---MGIVVCAGHGLNYSNVKELLKIPSLRELNIGHSVVSKAVLVGLEKAILEMAQLIKR
1HO4 Chain:B ((5-237))
--LGVNIDHIATLRNARGTAYPDPVQAAFIAEQA-GADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEM--LAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTGCYADA--------------------KTDAEQAQELA-------RIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRLMLE
General information:
TITO was launched using:
RESULT:
Template:
1HO4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157070 for 2002 contacts (-78.5/contact) +
2D Compatibility (PS) -25168 + (NN) -17117 + (LL) 2252
1D Compatibility (HY) -15200 + (ID) 4900
Total energy: -217203.0 ( -108.49 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_1HO4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HO4-query.scw
PDB file :
Tito_Scwrl_1HO4.pdb
: