Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKPSMKRQIAQTGIIHRPLPIETEHALETLAKKKQVLSSRTLFSSKQHVSLEFTHQGAGDFTISGQDEIKLSSPVVMPHWPAGAPDDGDYTNFGNVTISASIGNEDWSGFNRVRIQVFPDFPGVTNPYLMISFKNDGTVKVPDIYGREGVHGVNLINHEWNDVIFEIEGLPRDRMTEMSFSYYLNGPERLTAGTMELFINEIKLEQISEPEISKGWLPQNNTLIYSHNGYSKDMPKVAFCANKHAATTFTIHDKETDKVVFTGKSYQNATETGNFVILDFSDLQTVGEYYLKFADMQTEIFQIGTSEVIWESSIWKSLNFIFCERCGCPVFGK----------HTTCHADIIAEHDGKQLSFNGGWHDAGD----VSQQLIQTAEVTMALYEMAASLP---EKEETLRMRLLEEGEWGLDFILKTRFGDG-------FRATSAGMTRWTDGLVGGMDDAIARVHNQAYENFYCAGIEAYIGSQIAD----NATMQNHLLRIAEEDLLFAIKELEKHGTSQKPIFWEHTYQTSESLYYATASWAASMVYQLTNKEIYAEKAAEWLDLMLEAQEKAGIRDSETSELYKGFFYRDKSHKVIQHFNHQAREHLYLLALEAALETQPSHAEKQTWLQAVEMYGDYLKKVTRFTKPYPLIPAGLYKKDEYLDEASFHLQHLLIDERAIEEYQLQFEQGIKINDEVALRKFPIWFSFRGNNAILLSAGKAASIAGKILKDKALLDIAEGQLQWVIGMNPFGQSMMHGEGYRYAQ--QYSVLNGEITGEIPVGMETFR-----------NEDEPYWPEFNNATYKEVWVGNAGKWMSIVADLNKITGKS------------- |
| 1TF4 Chain:B ((1-460)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPAFNYAEALQKSMFFYEAQRSGKLPE--NNRVSWRGDSGLNDGADV-------GLDLTGGWYDAGDHVKFGFPMAFTATMLAWGAIESPEGYIRSG-----QMPYLKDNLRWVNDYFIKAH-PS-PNVLYVQVGDGDADHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAKQLYTFADTYRGV---YSDCVPAGAFYNSWSG-YQDELVWGAYWLYKATGDDSYLAKAEYEYDFLSTEQQ-------------------TDLRSYRWTIAWDDKSYGTYVLLAKET--G-----KQKYIDDANRWLDYWTVGVN-GQRVPYSPGGM-----------------------------------------AV--LDTWGALRYAANTAFVALVYAKVIDDPVRKQRYHDFAVRQINYALGDNPRNSSYVVGFGNNPPRNPHHRTAHGSWTDSIASPAENRHVLYGALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALAMLVEEYGGTPLADFPPTEEPDG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1TF4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -109409 for 3578 contacts (-30.6/contact) +
2D Compatibility (PS) -42644 + (NN) -18948 + (LL) 23424
1D Compatibility (HY) -2800 + (ID) 3750
Total energy: -154127.0 ( -43.08 by residue)
QMean score : 0.323
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