Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKSLSFMR--VLEAVRTMLQEKGGLDISIVMR-DQVEMPTTMIEMID----QEEEESQTAWKEKYRFAIH-----HYTNETDLAGVEKIDT---LIQTGFTLPEGYKLIAVRHYGKQNLVKENTLIHAKTSFEVS--ICRELKVKI---
4QXA Chain:B ((9-179))
-ATLLYGKNNVLVQPRDDMEAVPGY-LSLHQTADVMTLKWTPNQLMNGSVGDLDYEKSVYWDYAVTIRLEEIVYLHCHQQVDSGGTVVLVSQDGIQRPPFRFPKGGHLLQFLSCLENGLLPHGQLDPPLWSQRGKGKVATDYVFRIIYP
General information:
TITO was launched using:
RESULT:
Template:
4QXA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11141 for 809 contacts (-13.8/contact) +
2D Compatibility (PS) -12625 + (NN) 9357 + (LL) 116
1D Compatibility (HY) -6800 + (ID) 1050
Total energy: -22143.0 ( -27.37 by residue)
QMean score : 0.174
(partial model without unconserved sides chains):
PDB file :
Tito_4QXA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QXA-query.scw
PDB file :
Tito_Scwrl_4QXA.pdb
: