Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYQDALKQIDANKVYTAEEAVELAKKI-DFAKFDATVEVAFRL-GVDPKKADQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGESEFVEKI--NQGWFDFDVIVATPDMMGEVGK-LGRVLGPKGLMPNPKTGTV--TMDVTKAVNEIKAGKVEYRVDKAGNVHAAIGKVSFDAAKLVENFRTVNDVLQKAKPAAAKGT-YVKNLSVTTTFGPGIKVDPASL
487D Chain:H ((1-224))
-----KRYRALLEKVDPNKIYTIDEAAHLVKELA-TAKFDETVEVHAKLG-IDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILD--GWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGF--NIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKG-TFLRSVYVTTTMGPSVRINPHS-
General information:
TITO was launched using:
RESULT:
Template:
487D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112769 for 1658 contacts (-68.0/contact) +
2D Compatibility (PS) -23939 + (NN) -16466 + (LL) 588
1D Compatibility (HY) -18400 + (ID) 5850
Total energy: -176836.0 ( -106.66 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_487D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-487D-query.scw
PDB file :
Tito_Scwrl_487D.pdb
: