Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRNYHVKFLNEKDVELAEAVCAASEDYYLIEQDK-----SASKS-DALKIITEIPDGKTRFDKFVLAVLDENEKPIGLVDIVSDYP---RKGRWFIGLLLLTPDARHNGLGKVLHQTIKEWASDGGADSLALGVLAENEKGRGFFEHLGYTKEETKQASYGGKEQEVSIFTLAIK
2CY2 Chain:A ((1-168))
----VRIRRAGLEDLPGVARVLVDTWRATYRGVVPEAFLEGLSYEGQAERWAQRLK-TP-TWPGRLFVAESESGEVVGFAAFGPDRASGFPGYTAELWAIYVLPTWQRKGLGRALFHEGARLLQAEGYGRMLVWVLKENPKGRGFYEHLGGVLLGEREIELGGAKLWEVAYGFD--
General information:
TITO was launched using:
RESULT:
Template:
2CY2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73085 for 1177 contacts (-62.1/contact) +
2D Compatibility (PS) -17413 + (NN) -8432 + (LL) 536
1D Compatibility (HY) -3600 + (ID) 1400
Total energy: -103394.0 ( -87.85 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_2CY2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CY2-query.scw
PDB file :
Tito_Scwrl_2CY2.pdb
: