Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LAQLSLEHIYKIYDNKVTAVSDFNLEIDDKEFIVFVGPSGCGKSTTLRMIAGLEEISKGELSIDGKVMNNVAPKDRDIAMVFQNYALYPHMTVYDNMAFGLKLRKMPKDEIKKRVEHAANILGLTEYLKRKPSALSGGQRQRVALGRAIVRDAKVFLMDEPLSNLDAKLRVQMRAEITKLHQQLDTTMIYVTHDQTEAMTMATRIVIMKDGVIQQVGSPKQVYDHPVNMFVAGFIGSPAMNF---FKGRLEGSNFI--GDDFTIEVPEG-KLKLLKDRGFDGKNIVFGIRPEDIHDEPIVIEAN-PGYTFKATTIVAELTGAEFMLHSRVGTHEFVARV-DARSEHQPNEVLTLAFEMSKSHFFDPETEDNLTD |
| 2YYZ Chain:A ((10-358)) | ----------KKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNPPTNFLRDFSVSVENKQTILKRDDVIIKLPEPVDVKL--------KEVVVGIRPEHCRISRERVENSIPGVVY-----VVEPLGRDIIVNVKTEKGEIIKVFGDTGKAPQPGENVFLVPDLRKIHLFNPETEETI-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YYZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -171299 for 2582 contacts (-66.3/contact) +
2D Compatibility (PS) -37249 + (NN) -14943 + (LL) 1676
1D Compatibility (HY) -34800 + (ID) 8300
Total energy: -264915.0 ( -102.60 by residue)
QMean score : 0.485
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