Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VFIHGFQEEVGNLWQETLRHPFVRSLADGTLEKEAFYYYLLQDDYYLSHFEKVIEKSVEQAGTAELAAEMREVQVRLQQSELLMREQFYPRVGLTERDFSERKPAPTAYHYTSHLHRMVDFGSFGVTIAALLPCYALYADIGKMYEGAR--SSEPFYQELLDSYVDENYQKVVLQQKRLVEQAASMADARELALMKQAFQISVEMEWAFFDMAYKKQNWRGSVNYV
2GM8 Chain:A ((12-220))
--TGELRRRADGIWQRILAHPFVAELYAGTLPMEKFKYYLLQDYNYLVNFAKALSLAASRAPSVDLMKTALELAYGTVTGEMANYEALLKEVGLSLRDAAEAEPNRVNVSYMAYLKSTCALEGFYQCMAALLPCFWSYAEIAERHGGKLRENPVHVYKKWASVYLSPEYRGLVERLRAVLDSSGLS-----AEELWPYFKEASLYELEFWQAAYEG----------
General information:
TITO was launched using:
RESULT:
Template:
2GM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119554 for 1696 contacts (-70.5/contact) +
2D Compatibility (PS) -22177 + (NN) -6091 + (LL) 1232
1D Compatibility (HY) -12400 + (ID) 2850
Total energy: -161840.0 ( -95.42 by residue)
QMean score : 0.651
(partial model without unconserved sides chains):
PDB file :
Tito_2GM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GM8-query.scw
PDB file :
Tito_Scwrl_2GM8.pdb
: