Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKTWEEFLKQEAKQPYFIELMEAVKDARAKGNVYPSEEDMFSCFRLCPYNQVKVVILGQDPYHGPGQAHGLSFSVQKDVRIPPSLRNIYKELKTDL-DIEPADHGYLAKWAEQGVLLMNTSWSVEEGKAGSHKKLGWATFTDHVLEELNNYDKPLVFILWGNHAIKAASGITNPQHLIIKGVHPSPLAASRGFFGSKPFSKTNAFLEEHERKPIDWDLNEQ
2SSP Chain:E ((6-220))
--ESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPASVYRGFFGCRHFSKTNELLQKSGKKPIDW-----
General information:
TITO was launched using:
RESULT:
Template:
2SSP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103215 for 1781 contacts (-58.0/contact) +
2D Compatibility (PS) -23083 + (NN) -13998 + (LL) 644
1D Compatibility (HY) -20400 + (ID) 5400
Total energy: -165452.0 ( -92.90 by residue)
QMean score : 0.729
(partial model without unconserved sides chains):
PDB file :
Tito_2SSP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2SSP-query.scw
PDB file :
Tito_Scwrl_2SSP.pdb
: