Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------MQNDMYNNIRLSVIQLI--------------------DSKKENLKENNIKLTIIKNEKDGYVVELDNDKCMAEIVVEEPTY-------TPYRYISFE---------------------VVSLMDGKVKIIYSWYDDETSQWSDIEKELNKGIQFLNNFKTMEQ
2JKG Chain:A ((5-169))
YSWDSYLNDRLLATNQVSGAGLASEEDGVVYACVAQGEESDPNFDKWSLFYKEDYDIEVEDENGTKTTKTINEGQTILVVFNEGYAPDGVWLGGTKYQFINIERDLEFEGYNFDVATCAKLKGGLHLVKVPGGNILVVLYDEEKEQ--DRGNSKIAALTFAKELAES--
General information:
TITO was launched using:
RESULT:
Template:
2JKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23465 for 663 contacts (-35.4/contact) +
2D Compatibility (PS) -11953 + (NN) -4730 + (LL) 352
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -44146.0 ( -66.59 by residue)
QMean score : 0.286
(partial model without unconserved sides chains):
PDB file :
Tito_2JKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JKG-query.scw
PDB file :
Tito_Scwrl_2JKG.pdb
: