Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQKEMLNFDYY-NPTHIIFGKNRFNELNEVIPQ-DK-KVLILYGGGSVERFGTLDKVKAALKSREVGEFGGIEANPTYETLIKAIQLVKEENYDFLLAVGGGSVIDGTKFVAAGALFDGEPMDIFGSGIGEKRPITKALPFGTVLTLPATGSEMNSGGVITFVEKKAKLGFGSAYTYPVFSLLDPELTYTLPKRQLANGIMDAYVHVMEQYMTYPVGALLQDRYAESLLQTLIEIGPDVIKEDNHDYNTRATFMWSATNALNGTLSRGVPQDWASHSLGHEITALYGIDHARTLAIVLPSLLNVRRSEKHDKLVQYAERVWGITSGSDEEKIDAAILKTREFFESLGAGTRFSDYGLGEEVVDLLVDQLDRHGLTNISERGDQTLEVSRQIYTNAL |
| 3W5S Chain:A ((21-365)) | ----MQPFVYTTAPARIVFGTGSSVGVAEEIRRLGLSRALVLSTPHQK---GDAEALAARLGPLAAGVFSDAAMHTPVEVTKRAVEAYRAAGADCVVSLGGGSTTGLGKAIALRT----------------------DAPQIVIPTTY-AGSEVTPILGQTEN--GVKTTLRGPEILPEVVIYDAELTLGLPVGISMTSGLNAMAHAAEALYARD-RNPIASMMAVEGLRAMIEALPGVRMEPQ-DTKARETALYGAWLCGTVLG---AVGMSLHHKLCHTLGGSLDLPHAETHAVLLPYTIAYVEQAVPDQLAPLAALVG-GR----------AGTGLYDFAARLGAPASLAALGVGGEDLDAMAELATAN---PYWCPRPVEKTAIRALLQRAF |
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General information:
TITO was launched using:
| RESULT:
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Template: 3W5S.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -207774 for 3213 contacts (-64.7/contact) +
2D Compatibility (PS) -36091 + (NN) -8397 + (LL) 2004
1D Compatibility (HY) -3200 + (ID) 3850
Total energy: -257308.0 ( -80.08 by residue)
QMean score : 0.469
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