Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MRDQKLKFLVVDALFAVIIALLAQVAIPLGPIPLTGQTFAIGLAATILGARHGTISVLVYIVLGAVGIPVFQGMTAGIGI--IFGPTGGFIIG-FIFNAFLTGWLLEKTKFTVPYA------IVANILG-AIVTLIFGVLWLKVSTGLDWPTAFLTGMVPFIIPGI-IKAVFAALLGIIIRDRLIKAKLLR-A-S
4QT6 Chain:A ((1-157))
GFDPEKAQCCLVENGQILTHG--------------SGGK-GYGLAST--GVTSGCYQWKFYIVKENRG---NEGTCVGVSRWPVHDFNHRTTSDMWLYRAY-SGNLYHNGEQTLTLSSFTQGDFITCVLDMEARTISFGK------NGEEPKLAFEDVDAAELYPCVMFYS----------SNPGEKVKICDMQMR
General information:
TITO was launched using:
RESULT:
Template:
4QT6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148873 for 1104 contacts (-134.8/contact) +
2D Compatibility (PS) -15542 + (NN) 1631 + (LL) 4204
1D Compatibility (HY) -3200 + (ID) 1450
Total energy: -163230.0 ( -147.85 by residue)
QMean score : 0.082
(partial model without unconserved sides chains):
PDB file :
Tito_4QT6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QT6-query.scw
PDB file :
Tito_Scwrl_4QT6.pdb
: