Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTIKKTLTIAGSDSSGGAGLQADLKTFEEYGTYGFSAITTIVTMDPDNNWAHGVTPIDAQLVREQLKTILSGGPVDAMKTGMLGSIEIIKATREAIDKYDLKNVVIDPVMVCKGEDELIQPENAEAIRDLLLPKATITTPNLFEAGQLSGLGKLTTLDDMKAAAKKIIELGAKYVVIKGGKALESDKAIDLLYDGKEFTIYEVEKISPSHNHGAGCTFAAAITAGLAKGLTVEEAVAKAKDFVTAAIKGGFALNEFIGPVWHGAYNKAENR |
| 4C5K Chain:B ((3-268)) | --LKKVLTIAGSDTSAGAGMQADLKTFQELDTYGMVALTAIVTMDKDT-WSHDVTPLPMDVFEKQLETALSIGP-DAIKTGMLGTEEIIKRAGEVYEASNAQYFVVDPVMVCK--DEVLNPGNTEAMIKYLLPKATVVTPNLFEAGQLSGLGKLNSIEDMKKAATIIFDKGAQHVIIKGGKALDQDKSYDLYYDGQTFYQLTTDMFQQSYNHGAGCTFAAATTAYLANGKSPKEAVISAKAFVASAIKNGWKMNDFVGPVDHGAYNRIEH- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4C5K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -107713 for 2418 contacts (-44.5/contact) +
2D Compatibility (PS) -30463 + (NN) -19671 + (LL) 404
1D Compatibility (HY) -24400 + (ID) 7800
Total energy: -189643.0 ( -78.43 by residue)
QMean score : 0.555
|
|
|