Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEKVLWGYDEKTGPEMWGHICSDFEIAHTGKAQSPVDIEQADVVKLKPSTMKFYYKETDYTIRRIEQSVHVFPHDKEQGLRFN--GEYYPLVSFHAHIPAEHLLDGYIYPIEWHFVHEKPDGTTLVMSAWMDIDNTN---NIEFKN-LPTYFPEVFADFETEREITLDVNEFMPEERVFYTYQGSRTTPPTVEGVTWIVLKNAKTLGQEDFTEFEKAIG-NTSRPVQDLNGREITFYN
4X5S Chain:B ((10-228))
-------WSYEGENGPENWAKLNPEYFWCNL-KNQSPVDI--SDNYKVHAKLEKLHINYNKAVNPEIVNNGHTIQVNVLEDFKLNIKGKEYHLKQFHFHAPSEHTVNGKYYPLEMHLVHKDKDGNIAVIGVFFKEGKANPELDKVFKNALKEEGSKVF-------DGSININALLPPVKNYYTYSGSLTTPPCTEGVLWIVLKQPITASKQQIELFKSIMKHNNNRPTQPINSRYI----
General information:
TITO was launched using:
RESULT:
Template:
4X5S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70862 for 1610 contacts (-44.0/contact) +
2D Compatibility (PS) -22487 + (NN) -6206 + (LL) 1668
1D Compatibility (HY) -10800 + (ID) 3650
Total energy: -112337.0 ( -69.77 by residue)
QMean score : 0.298
(partial model without unconserved sides chains):
PDB file :
Tito_4X5S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4X5S-query.scw
PDB file :
Tito_Scwrl_4X5S.pdb
: